Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Isop_1823COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: psl:Psta_4154 transglutaminase domain protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein; SPTR: Transglutaminase-like protein; PFAM: Transglutaminase-like superfamily. (494 aa)    
Predicted Functional Partners:
Isop_2329
KEGG: psl:Psta_4730 hypothetical protein; SPTR: Outer membrane protein-like protein.
  
     0.525
Isop_1800
KEGG: psl:Psta_3976 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.514
Isop_3151
Peptidase M56 BlaR1; InterPro IPR008756; KEGG: sus:Acid_5553 peptidase M56, BlaR1; PFAM: peptidase M56 BlaR1; SPTR: Peptidase M56, BlaR1.
  
     0.514
Isop_0745
KEGG: psl:Psta_2460 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.503
Isop_3563
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR013026: IPR001440; KEGG: plm:Plim_0726 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein.
  
     0.495
Isop_2313
PEGA domain protein; InterPro IPR013229; KEGG: plm:Plim_2448 PEGA domain protein; PFAM: PEGA domain protein; SPTR: PEGA domain protein; PFAM: PEGA domain.
  
     0.490
Isop_2859
Hypothetical protein; InterPro IPR019734: IPR013026; KEGG: psl:Psta_2415 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
  
     0.481
Isop_3273
KEGG: psl:Psta_3030 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.476
Isop_0359
KEGG: plm:Plim_0766 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.467
Isop_2518
Peptidase S24 and S26 domain protein; InterPro IPR006650: IPR019758: IPR000223; KEGG: plm:Plim_1125 peptidase S24 and S26 domain protein; SPTR: Peptidase S24 and S26 domain protein.
  
    0.464
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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