Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Isop_1829Hypothetical protein; KEGG: cdi:DIP0772 putative ATP-dependent DNA helicase; SPTR: Putative ATP-dependent DNA helicase. (76 aa)    
Predicted Functional Partners:
Isop_1830
Type III restriction protein res subunit; COGs: COG1061 DNA or RNA helicase of superfamily II; InterProIPR006935: IPR001650: IPR014001: IPR001161: IPR 014021; KEGG: mta:Moth_1918 DEAD/DEAH box helicase-like; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase-like; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.
       0.640
Isop_1828
KEGG: sti:Sthe_2169 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.499
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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