STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1892Methyltransferase FkbM family; InterPro IPR006342; KEGG: mar:MAE_13110 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family. (310 aa)    
Predicted Functional Partners:
Isop_2420
InterPro IPR006342; KEGG: naz:Aazo_5202 FkbM family methyltransferase; SPTR: Methyltransferase FkbM family; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family.
  
     0.626
Isop_3305
Methyltransferase FkbM family; InterPro IPR006342; KEGG: rba:RB2498 putative methyltransferase; SPTR: Putative uncharacterized protein; TIGRFAM: methyltransferase FkbM family; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: methyltransferase, FkbM family.
  
     0.620
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
       0.566
Isop_1168
Methyltransferase FkbM family; InterPro IPR006342; KEGG: rru:Rru_A3719 methyltransferase FkbM; SPTR: Genome sequencing data, contig C315; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family.
  
     0.452
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.