STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1906COGs: COG0438 Glycosyltransferase; InterPro IPR001296: IPR001173; KEGG: ote:Oter_3266 glycosyl transferase family protein; PFAM: glycosyl transferase group 1; glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferases group 1; Glycosyl transferase family 2. (773 aa)    
Predicted Functional Partners:
Isop_1905
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sfu:Sfum_3338 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1.
 
    0.921
Isop_1903
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0890 A-glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: A-glycosyltransferase, glycosyltransferase family 4 protein; PFAM: Glycosyl transferases group 1.
 
    0.772
Isop_0916
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sru:SRU_0620 putative colanic acid biosynthesis glycosyl transferase; PFAM: glycosyl transferase group 1; SPTR: Putative colanic acid biosynthesis glycosyl transferase; PFAM: Glycosyl transferases group 1.
  
    0.574
Isop_1904
KEGG: chu:CHU_0867 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.553
Isop_1162
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: nde:NIDE2987 putative glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
    0.519
Isop_1227
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sti:Sthe_0904 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
    0.477
Isop_3451
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sti:Sthe_1714 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
    0.445
Isop_1408
Protein of unknown function UPF0136; InterPro IPR005349; KEGG: ter:Tery_4061 hypothetical protein; PFAM: protein of unknown function UPF0136; SPTR: Putative uncharacterized protein; PFAM: Transmembrane proteins 14C.
  
     0.441
Isop_1520
InterPro IPR019734: IPR013026: IPR001440; KEGG: dak:DaAHT2_1784 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein.
 
 
 
 0.431
Isop_1226
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cag:Cagg_2495 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
 
    0.418
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.