STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1966COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200: IPR000150: IPR006379; KEGG: ttr:Tter_1448 Cof-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: Cof-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB. (298 aa)    
Predicted Functional Partners:
Isop_1965
Hypothetical protein; KEGG: psl:Psta_3038 peptidase-like protein; SPTR: Peptidase-like protein.
       0.773
Isop_1967
ASPIC/UnbV domain protein; InterPro IPR013517: IPR011519; KEGG: sus:Acid_0215 ASPIC/UnbV domain-containing protein; PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; SPTR: ASPIC/UnbV domain protein; PFAM: ASPIC and UnbV; FG-GAP repeat.
       0.576
Isop_1964
Hypothetical protein; KEGG: vpr:Vpar_1579 DNA repair ATPase-like protein; SPTR: ATPase involved in DNA repair-like protein.
       0.498
Isop_3731
COGs: COG0469 Pyruvate kinase; InterPro IPR018209: IPR015793: IPR015794: IPR001697; KEGG: plm:Plim_3274 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.
 
 
 0.449
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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