STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_1985KEGG: plm:Plim_2121 hypothetical protein; SPTR: Putative uncharacterized protein. (309 aa)    
Predicted Functional Partners:
Isop_1986
KEGG: mdo:100024436 hypothetical protein LOC100024436; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.636
Isop_1983
Hypothetical protein; KEGG: htu:Htur_1455 pyrrolo-quinoline quinone; SPTR: Pyrrolo-quinoline quinone.
       0.601
Isop_1984
KEGG: plm:Plim_4245 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.601
Isop_1987
KEGG: aav:Aave_2261 hypothetical protein; SPTR: Beta-galactosidase family protein.
       0.600
Isop_1988
KEGG: bfo:BRAFLDRAFT_281325 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.600
Isop_1982
KEGG: pno:SNOG_05675 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.524
Isop_1989
KEGG: fal:FRAAL6684 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.496
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.