STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2017Von Willebrand factor type A; InterPro IPR002035; KEGG: psl:Psta_0969 hypothetical protein; SMART: von Willebrand factor type A; SPTR: Putative uncharacterized protein; PFAM: Predicted metallopeptidase (DUF2201). (417 aa)    
Predicted Functional Partners:
Isop_2012
Hypothetical protein; KEGG: rba:RB12718 putative tRNA adenylyltransferase; SPTR: Putative uncharacterized protein; PFAM: HD domain.
  
     0.615
Isop_3536
COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: plm:Plim_1164 magnesium protoporphyrin chelatase, putative; SPTR: Magnesium protoporphyrin chelatase, putative.
  
 
 0.604
Isop_2018
KEGG: cpc:Cpar_0963 hypothetical protein; SPTR: Conserved hypothetical membrane protein.
       0.574
Isop_2016
Thiaminase;4-amino-5-aminomethyl-2- methylpyrimidine deaminase; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway; Belongs to the TenA family.
       0.559
Isop_1001
InterPro IPR001129: IPR001446; KEGG: gvi:glr3057 glutathione S-transferase; PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); SPTR: Glr3057 protein; PFAM: MAPEG family.
  
     0.556
Isop_3179
Hypothetical protein; KEGG: rba:RB850 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.554
Isop_0966
Hypothetical protein; KEGG: rba:RB6127 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.550
Isop_2262
COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: plm:Plim_0363 glucose sorbosone dehydrogenase; SPTR: Protein up-regulated by thyroid hormone-putative PQQ-dependent glucose dehydrogenase; PFAM: Glucose / Sorbosone dehydrogenase.
  
     0.521
Isop_0986
KEGG: psl:Psta_0111 organic solvent tolerance protein OstA-like protein; SPTR: Organic solvent tolerance protein OstA-like protein.
  
     0.487
Isop_2047
InterPro IPR011521; KEGG: psl:Psta_1964 YTV domain protein; PFAM: YTV repeat-containing protein; SPTR: YTV domain protein; PFAM: YTV.
  
     0.486
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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