STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2044Hypothetical protein; InterPro IPR013424; KEGG: rba:RB4575 signal peptide; SPTR: Putative uncharacterized protein. (273 aa)    
Predicted Functional Partners:
Isop_2045
KEGG: mac:MA4289 cell surface protein; SPTR: Cell surface protein.
     0.907
Isop_2043
Hypothetical protein; InterPro IPR012902; KEGG: rba:RB6458 signal peptide; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
     0.740
Isop_0549
KEGG: rba:RB10354 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 0.656
Isop_1870
KEGG: psl:Psta_4021 ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter.
  
     0.613
Isop_2160
Secretion protein HlyD family protein; InterPro IPR003997: IPR006143; KEGG: rba:RB10473 alkaline protease secretion protein AprE; PFAM: secretion protein HlyD family protein; SPTR: Similar to alkaline proteinase secretion protein aprE.
  
     0.563
Isop_0177
KEGG: eba:ebA4323 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.552
Isop_0178
KEGG: eba:ebA4323 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.552
Isop_0179
KEGG: eba:ebA4323 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.552
Isop_1978
Sialate O-acetylesterase; InterPro IPR005181; KEGG: rba:RB10048 sialic acid-specific 9-O-acetylesterase; PFAM: protein of unknown function DUF303 acetylesterase; PRIAM: Sialate O-acetylesterase; SPTR: Sialic acid-specific 9-O-acetylesterase; PFAM: Domain of unknown function (DUF303).
   
 
 0.552
Isop_3597
Lipolytic protein G-D-S-L family; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087: IPR017970; KEGG: plm:Plim_2575 lipolytic protein G-D-S-L family; PFAM: lipolytic protein G-D-S-L family; SPTR: Putative secreted protein; PFAM: GDSL-like Lipase/Acylhydrolase.
   
 
 0.552
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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