STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2116KEGG: drt:Dret_1972 hypothetical protein; SPTR: Putative uncharacterized protein. (118 aa)    
Predicted Functional Partners:
Isop_0150
ABC-1 domain-containing protein; COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: cvi:CV_2967 ubiquinone biosynthesis protein; PFAM: ABC-1 domain-containing protein; SPTR: Probable ubiquinone biosynthesis protein; PFAM: ABC1 family.
 
     0.511
Isop_2117
Signal peptide peptidase SppA, 36K type; COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142: IPR004635; KEGG: rba:RB1371 proteinase IV homolog YteI; PFAM: peptidase S49; SPTR: Proteinase IV homolog yteI; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type.
 
     0.479
Isop_1520
InterPro IPR019734: IPR013026: IPR001440; KEGG: dak:DaAHT2_1784 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein.
  
     0.424
Isop_0643
Peptidase A24A prepilin type IV; InterPro IPR000045; KEGG: plm:Plim_1841 peptidase A24A domain protein; PFAM: peptidase A24A prepilin type IV; SPTR: Probable type 4 prepilin-like proteins leader peptide processing enzyme; PFAM: Type IV leader peptidase family.
  
     0.421
Isop_3043
EpsI family protein; InterPro IPR014263; KEGG: dba:Dbac_2581 EpsI family protein; SPTR: EpsI family protein; TIGRFAM: EpsI family protein; PFAM: Protein of unknown function (DUF3485); TIGRFAM: EpsI family protein.
  
     0.405
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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