STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2123KEGG: tit:Thit_1395 hypothetical protein; SPTR: Putative uncharacterized protein. (553 aa)    
Predicted Functional Partners:
Isop_2710
KEGG: plm:Plim_0186 protein-L-isoaspartate O-methyltransferase; SPTR: Protein-L-isoaspartate O-methyltransferase.
  
     0.669
Isop_3495
Hypothetical protein; KEGG: mtp:Mthe_1626 periplasmic copper-binding; SPTR: Putative lipoprotein.
  
     0.528
Isop_2584
Hypothetical protein; KEGG: hwa:HQ1193A cell surface glycoprotein; SPTR: Probable cell surface glycoprotein.
  
     0.501
Isop_2737
Hypothetical protein; KEGG: rrs:RoseRS_0824 glycosyltransferase; SPTR: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.500
Isop_3698
KEGG: scl:sce3364 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.469
Isop_2603
Hypothetical protein; InterPro IPR019004; KEGG: coc:Coch_1384 hypothetical protein; SPTR: Yqey-like protein; PFAM: Yqey-like protein.
  
     0.457
Isop_2653
Hypothetical protein; COGs: COG3387 Glucoamylase and related glycosyl hydrolase; KEGG: tjr:TherJR_2725 glycoside hydrolase 15-related protein; SPTR: Glycoside hydrolase 15-related protein.
  
     0.435
Isop_2124
Metal dependent phosphohydrolase; COGs: COG3481 HD-superfamily hydrolase; InterPro IPR003607: IPR006674; KEGG: psl:Psta_4761 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Nucleic acid-binding protein, putative; PFAM: HD domain.
       0.428
Isop_1772
KEGG: hoh:Hoch_4942 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.423
Isop_2197
Methyltransferase type 11; InterPro IPR013216; KEGG: rca:Rcas_0141 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain.
  
     0.417
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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