STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2165Metallophosphoesterase; InterPro IPR004843; KEGG: scl:sce5969 calcineurin-like phosphoesterase; PFAM: metallophosphoesterase; SPTR: Calcineurin-like phosphoesterase; PFAM: Calcineurin-like phosphoesterase. (282 aa)    
Predicted Functional Partners:
Isop_2166
Peptidase M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587: IPR000994; KEGG: psl:Psta_4481 peptidase M24; PFAM: peptidase M24; creatinase; SPTR: Putative peptidase; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain.
       0.773
Isop_2115
COGs: COG2191 Formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: cyb:CYB_0846 hypothetical protein; PFAM: formylmethanofuran dehydrogenase subunit E region; SPTR: Conserved domain protein; PFAM: FmdE, Molybdenum formylmethanofuran dehydrogenase operon.
  
     0.666
Isop_2167
Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.538
Isop_2897
KEGG: mxa:MXAN_7038 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.529
Isop_0727
Hypothetical protein; KEGG: rba:RB4576 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.467
Isop_0332
tRNA synthetase class II (G H P and S); InterPro IPR002314: IPR000408: IPR006195; KEGG: scl:sce6565 hypothetical protein; PFAM: tRNA synthetase class II (G H P and S); SPTR: SerS1 protein; PFAM: tRNA synthetase class II core domain (G, H, P, S and T).
  
     0.427
Isop_2279
Hypothetical protein; KEGG: rba:RB12630 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.408
Isop_2168
Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.403
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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