STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2200KEGG: pan:PODANSg965 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: PGAP1-like protein. (284 aa)    
Predicted Functional Partners:
Isop_2199
Sugar transporter; InterPro IPR005829: IPR003663; KEGG: nml:Namu_4863 sugar transporter; SPTR: Sugar transporter; TIGRFAM: sugar transporter; PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.752
rplQ
COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: mca:MCA2346 ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17.
  
 
   0.647
Isop_0236
PDZ/DHR/GLGF domain protein; InterPro IPR001478: IPR001969; KEGG: rlt:Rleg2_1589 membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Membrane-associated zinc metalloprotease; PFAM: PDZ domain (Also known as DHR or GLGF).
  
     0.570
rplL
LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.565
Isop_0150
ABC-1 domain-containing protein; COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: cvi:CV_2967 ubiquinone biosynthesis protein; PFAM: ABC-1 domain-containing protein; SPTR: Probable ubiquinone biosynthesis protein; PFAM: ABC1 family.
   
   0.564
Isop_1930
Alpha/beta hydrolase fold protein; COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: lic:LIC11875 putative hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: Putative hydrolase; PFAM: ab-hydrolase associated lipase region; alpha/beta hydrolase fold.
  
   
 0.563
rplC
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.562
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.558
rpmG
LSU ribosomal protein L33P; InterPro IPR001705; KEGG: plm:Plim_0436 ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.558
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.558
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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