STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2232ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR017871: IPR003439; KEGG: sus:Acid_6574 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter. (264 aa)    
Predicted Functional Partners:
Isop_1679
ABC transporter related protein; COGs: COG1117 ABC-type phosphate transport system ATPase component; InterProIPR000387: IPR003439: IPR017871: IPR016130: IPR 003593: IPR003595: IPR000340; KEGG: dac:Daci_1595 ABC transporter related; PFAM: ABC transporter related; Dual specificity protein phosphatase; SMART: AAA ATPase; Protein-tyrosine phosphatase, catalytic; SPTR: ABC transporter related; PFAM: ABC transporter; Dual specificity phosphatase, catalytic domain.
  
     0.602
Isop_2233
Hypothetical protein; KEGG: xac:XAC1202 oligopeptide transporter; SPTR: Oligopeptide transporter.
       0.583
Isop_1425
ABC transporter related protein; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439: IPR003339: IPR017871: IPR003593; KEGG: tbi:Tbis_0515 cobalt ABC transporter ATPase subunit; PFAM: ABC transporter related; cobalt transport protein; SMART: AAA ATPase; SPTR: Cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter; Cobalt transport protein.
 
   
 0.552
cysS
COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803: IPR015273: IPR002308; KEGG: psl:Psta_3589 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.470
Isop_3695
COGs: COG1277 ABC-type transport system involved in multi-copper enzyme maturation permease component; InterPro IPR019196; KEGG: cts:Ctha_0317 putative permease of ABC transporter; PFAM: ABC-type uncharacterised transport system; SPTR: Putative permease of ABC transporter; PFAM: ABC-type uncharacterized transport system.
 
 
 0.448
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.439
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.429
Isop_1545
KEGG: psl:Psta_4540 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.414
Isop_1357
Hypothetical protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003439: IPR017940: IPR006162; KEGG: cpe:CPE1525 ABC transporter; SPTR: Phospholipid-lipopolysaccharide ABC transporter.
  
  0.412
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
    0.410
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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