Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Isop_2240Hypothetical protein; KEGG: azl:AZL_027420 UvrD/REP helicase; SPTR: SNF2-related protein. (262 aa)    
Predicted Functional Partners:
Isop_2238
InterPro IPR019734: IPR001440: IPR013026; KEGG: ade:Adeh_3311 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR domain protein.
       0.773
Isop_2239
Exosortase EpsH-related protein; InterPro IPR019127; KEGG: rba:RB2461 hypothetical protein; PFAM: Exosortase EpsH-related; SPTR: Putative uncharacterized protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: eight transmembrane protein EpsH (proposed exosortase).
       0.773
Isop_2241
Hypothetical protein; KEGG: bgl:bglu_1p1330 TonB family protein; SPTR: Predicted protein.
       0.464
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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