STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2266Protein of unknown function DUF403; COGs: COG2307 conserved hypothetical protein; InterPro IPR007296; KEGG: rca:Rcas_3760 hypothetical protein; PFAM: protein of unknown function DUF403; SPTR: Putative uncharacterized protein; PFAM: Bacterial domain of unknown function (DUF403). (318 aa)    
Predicted Functional Partners:
Isop_2267
Protein of unknown function DUF404; COGs: COG2308 conserved hypothetical protein; InterPro IPR016450: IPR007297: IPR007302; KEGG: hau:Haur_3415 hypothetical protein; PFAM: protein of unknown function DUF404; protein of unknown function DUF407; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF407); Domain of unknown function (DUF404).
    0.970
Isop_2265
COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931: IPR013589; KEGG: cag:Cagg_2254 transglutaminase domain protein; PFAM: transglutaminase domain-containing protein; transglutaminase domain protein; SMART: transglutaminase domain-containing protein; SPTR: Transglutaminase domain protein; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region.
  
 0.953
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.457
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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