STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2268Hypothetical protein; KEGG: amc:MADE_02276 vcbs repeat-containing protein; SPTR: Putative uncharacterized protein. (916 aa)    
Predicted Functional Partners:
Isop_3404
Hypothetical protein; InterPro IPR018247; KEGG: hwa:HQ1193A cell surface glycoprotein; SPTR: Probable cell surface glycoprotein; PFAM: Subtilase family.
  
     0.772
Isop_0118
Hypothetical protein; KEGG: psl:Psta_0521 von Willebrand factor type A; SPTR: von Willebrand factor type A.
  
     0.744
Isop_3092
Hypothetical protein; KEGG: psl:Psta_4662 O-antigen polymerase; SPTR: Hemocyanin type 1-like protein; PFAM: O-Antigen ligase.
  
     0.705
Isop_0609
Peptidase M1 membrane alanine aminopeptidase; COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: tte:TTE2694 aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: Peptidase family M1, putative; PFAM: Peptidase family M1.
  
     0.695
Isop_1735
InterPro IPR004155; KEGG: rrs:RoseRS_3392 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat.
  
     0.690
Isop_2275
InterPro IPR001623; KEGG: tcu:Tcur_1396 fibronectin type III domain protein; PFAM: heat shock protein DnaJ domain protein; SPTR: Fibronectin type III domain protein.
  
    0.662
Isop_1399
KEGG: rmr:Rmar_0200 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.659
Isop_2983
KEGG: bra:BRADO6626 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Copper resistance protein D.
  
     0.641
Isop_2330
FG-GAP repeat protein; InterPro IPR013519: IPR013517; KEGG: noc:Noc_2093 integrins alpha chain; PFAM: FG-GAP repeat protein; SMART: Integrin alpha beta-propellor repeat protein; SPTR: Integrins alpha chain.
  
     0.635
Isop_1520
InterPro IPR019734: IPR013026: IPR001440; KEGG: dak:DaAHT2_1784 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein.
 
 
   0.622
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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