STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2289KEGG: dma:DMR_08260 hypothetical protein; SPTR: Putative uncharacterized protein. (183 aa)    
Predicted Functional Partners:
Isop_0461
Peptidase U32; COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: psl:Psta_3009 peptidase U32; PFAM: peptidase U32; SPTR: Peptidase U32; PFAM: Collagenase; Peptidase family U32.
  
  
 0.706
Isop_2288
InterPro IPR001258; KEGG: sus:Acid_1144 NHL repeat-containing protein; PFAM: NHL repeat containing protein; SPTR: Serine/threonine protein kinase; PFAM: NHL repeat.
       0.613
Isop_2294
Modification methylase NspV; InterPro IPR002052: IPR002296; KEGG: rca:Rcas_1074 modification methylase NspV; SPTR: Modification methylase NspV.
  
   
 0.550
Isop_2290
KEGG: psl:Psta_2852 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.505
Isop_2287
Hypothetical protein; InterPro IPR006311; KEGG: rba:RB2096 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3500); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
       0.444
Isop_2003
KR domain protein; COGs: COG3321 Polyketide synthase modules and related protein; InterProIPR014031: IPR014043: IPR006163: IPR013968: IPR 009081; KEGG: glo:Glov_2267 polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: KR domain protein; Beta-ketoacyl synthase; Acyl transferase; phosphopantetheine-binding; SPTR: Polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: acyl carrier protein.
   
 
 0.421
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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