STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2383Protein of unknown function DUF2237; COGs: COG3651 conserved hypothetical protein; InterPro IPR018714; KEGG: tel:tll1086 hypothetical protein; PFAM: Protein of unknown function DUF2237; SPTR: Tll1086 protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2237). (145 aa)    
Predicted Functional Partners:
Isop_2382
Protein of unknown function DUF1501; InterPro IPR006311: IPR010869: IPR017909; KEGG: rba:RB2170 hypothetical protein; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501).
       0.541
Isop_3505
Rhodopsin; COGs: COG5524 Bacteriorhodopsin; InterPro IPR017402: IPR001425: IPR018229; KEGG: srm:SRM_01698 Xanthorhodopsin; PFAM: rhodopsin; SPTR: Xanthorhodopsin; PFAM: Bacteriorhodopsin-like protein.
  
     0.516
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
       0.478
Isop_2381
InterPro IPR011444: IPR009056; KEGG: plm:Plim_0775 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
       0.416
Isop_2385
tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.412
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.