STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2407InterPro IPR013442; KEGG: tra:Trad_1670 CRISPR-associated protein, APE2256 family; PFAM: CRISPR-associated protein APE2256; SPTR: CRISPR-associated protein, APE2256 family; TIGRFAM: CRISPR-associated protein, APE2256 family; PFAM: CRISPR-associated protein (Cas_APE2256); TIGRFAM: putative CRISPR-associated protein, APE2256 family. (354 aa)    
Predicted Functional Partners:
Isop_2148
CRISPR-associated RAMP protein, Cmr4 family; COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR013410: IPR005537; KEGG: rce:RC1_3484 CRISPR-associated RAMP protein, putative; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, putative; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family.
 
     0.612
Isop_1718
KEGG: tel:tlr2278 hypothetical protein; SPTR: Tlr2278 protein; PFAM: DsrE/DsrF-like family.
  
     0.564
Isop_2149
InterPro IPR010160; KEGG: dae:Dtox_2976 CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein TM1791.1; SPTR: CRISPR-associated protein, Cmr5 family; TIGRFAM: CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein (Cas_Cmr5); TIGRFAM: CRISPR-associated protein, Cmr5 family.
 
     0.562
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.540
Isop_2221
4-vinyl reductase 4VR; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: tel:tll0856 hypothetical protein; PFAM: 4-vinyl reductase 4VR; SPTR: 4-vinyl reductase 4VR; PFAM: V4R domain.
  
     0.479
Isop_2147
CRISPR-associated protein, Cmr3; COGs: COG1769 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR019117; KEGG: hha:Hhal_0628 CRISPR-associated Cmr3 family protein; PFAM: CRISPR-associated protein, Cmr3; SPTR: CRISPR-associated protein, Cmr3 family; PFAM: CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR-associated protein, Cmr3 family.
 
     0.478
Isop_2150
CRISPR-associated RAMP protein, Cmr6 family; COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010172: IPR005537; KEGG: hor:Hore_15110 CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Cmr6 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family.
 
     0.461
Isop_2218
4-vinyl reductase 4VR; InterPro IPR004096; KEGG: cyp:PCC8801_1056 4-vinyl reductase 4VR; PFAM: 4-vinyl reductase 4VR; SPTR: 4-vinyl reductase 4VR; PFAM: V4R domain.
  
     0.432
Isop_2146
Hypothetical protein; KEGG: dae:Dtox_2979 CRISPR-associated protein, Crm2 family; SPTR: CRISPR-associated protein, Crm2 family; PFAM: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, Crm2 family.
 
     0.403
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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