STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2422KEGG: cgr:CAGL0J01771g hypothetical protein; SPTR: Similarity. (535 aa)    
Predicted Functional Partners:
Isop_2420
InterPro IPR006342; KEGG: naz:Aazo_5202 FkbM family methyltransferase; SPTR: Methyltransferase FkbM family; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family.
       0.773
Isop_2421
KEGG: cre:CHLREDRAFT_149710 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Mannosyltransferase putative.
       0.773
Isop_2423
Hypothetical protein; KEGG: xop:PXO_02602 transcriptional regulatory protein, C terminal; SPTR: Putative uncharacterized protein.
       0.773
Isop_2424
Hypothetical protein; KEGG: dac:Daci_0928 AMP-dependent synthetase and ligase; SPTR: Putative uncharacterized protein.
       0.773
Isop_2425
KEGG: sit:TM1040_1281 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.768
Isop_2426
KEGG: ppf:Pput_4105 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.768
Isop_2427
KEGG: psl:Psta_2206 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.768
Isop_2428
Hypothetical protein; InterPro IPR018114; KEGG: lsg:lse_0520 peptidoglycan bound protein (LPXTG motif); SPTR: Peptidoglycan bound protein (LPXTG motif).
       0.726
Isop_2429
KEGG: chy:CHY_1665 hypothetical protein; SPTR: Antigen A; PFAM: Phage major tail protein 2.
       0.675
Isop_2430
KEGG: avi:Avi_8200 replication protein B; SPTR: Replication protein B.
       0.661
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.