STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2432KEGG: plm:Plim_2119 hypothetical protein; SPTR: Putative uncharacterized protein. (126 aa)    
Predicted Functional Partners:
Isop_2433
Protein of unknown function UCP030771; COGs: COG5471 conserved hypothetical protein; InterPro IPR011231; KEGG: sbl:Sbal_3597 gifsy-2 prophage; putative RecA/RadA recombinase; PFAM: protein of unknown function UCP030771; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2190).
       0.778
Isop_2431
KEGG: htu:Htur_3964 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.776
Isop_2430
KEGG: avi:Avi_8200 replication protein B; SPTR: Replication protein B.
       0.774
Isop_2429
KEGG: chy:CHY_1665 hypothetical protein; SPTR: Antigen A; PFAM: Phage major tail protein 2.
       0.758
Isop_2428
Hypothetical protein; InterPro IPR018114; KEGG: lsg:lse_0520 peptidoglycan bound protein (LPXTG motif); SPTR: Peptidoglycan bound protein (LPXTG motif).
       0.703
Isop_2436
KEGG: osa:4346641 hypothetical protein; SPTR: Putative Peptidyl Prolyl cis-trans isomerase.
       0.674
Isop_2434
KEGG: dsa:Desal_2132 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Mu-like prophage major head subunit gpT.
       0.671
Isop_2435
Phage portal protein, lambda family; COGs: COG5511 Bacteriophage capsid protein; InterPro IPR006429; KEGG: lhk:LHK_01658 phage portal protein, lambda family; PFAM: portal protein lambda; SPTR: Phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: Phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family.
       0.671
Isop_2425
KEGG: sit:TM1040_1281 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.666
Isop_2426
KEGG: ppf:Pput_4105 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.666
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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