STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2438InterPro IPR000843: IPR014284; KEGG: sfu:Sfum_3783 ECF subfamily RNA polymerase sigma-24 factor; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (191 aa)    
Predicted Functional Partners:
Isop_2439
KEGG: oan:Oant_0214 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.584
Isop_2440
KEGG: mag:amb0352 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.556
Isop_2441
Protein of unknown function DUF669; InterPro IPR007731; KEGG: mgm:Mmc1_2920 hypothetical protein; PFAM: protein of unknown function DUF669; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF669).
       0.554
Isop_0753
KEGG: rba:RB2304 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.497
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.460
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.445
Isop_2437
KEGG: sfu:Sfum_3782 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.445
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.