close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2452KEGG: plm:Plim_2131 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phage terminase large subunit (GpA). (755 aa)    
Predicted Functional Partners:
Isop_2454
KEGG: tai:Taci_1503 putative bacteriophage related protein; SPTR: Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924).
 
     0.804
Isop_2451
KEGG: xce:Xcel_1612 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.778
Isop_2435
Phage portal protein, lambda family; COGs: COG5511 Bacteriophage capsid protein; InterPro IPR006429; KEGG: lhk:LHK_01658 phage portal protein, lambda family; PFAM: portal protein lambda; SPTR: Phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: Phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family.
 
  
 0.777
Isop_2425
KEGG: sit:TM1040_1281 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.759
Isop_2439
KEGG: oan:Oant_0214 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.743
Isop_2433
Protein of unknown function UCP030771; COGs: COG5471 conserved hypothetical protein; InterPro IPR011231; KEGG: sbl:Sbal_3597 gifsy-2 prophage; putative RecA/RadA recombinase; PFAM: protein of unknown function UCP030771; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2190).
 
     0.729
Isop_2455
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119: IPR011109; KEGG: hoh:Hoch_2866 resolvase domain protein; PFAM: Resolvase domain; Recombinase; SPTR: Resolvase domain protein; PFAM: Recombinase; Resolvase, N terminal domain.
 
     0.721
Isop_2434
KEGG: dsa:Desal_2132 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Mu-like prophage major head subunit gpT.
  
     0.696
Isop_0601
KEGG: sus:Acid_4318 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.647
Isop_2444
Bifunctional DNA primase/polymerase; COGs: COG3598 RecA-family ATPase; InterPro IPR015330: IPR014820; KEGG: aeh:Mlg_0791 ATPase-like protein; PFAM: Bifunctional DNA primase/polymerase; Primase 1; SPTR: Bifunctional DNA primase/polymerase; PFAM: Bifunctional DNA primase/polymerase, N-terminal; Primase C terminal 1 (PriCT-1).
  
     0.631
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: high (84%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.