STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2457KEGG: dde:Dde_0892 hypothetical protein; SPTR: Putative uncharacterized protein. (396 aa)    
Predicted Functional Partners:
Isop_2454
KEGG: tai:Taci_1503 putative bacteriophage related protein; SPTR: Putative bacteriophage related protein; PFAM: Protein of unknown function (DUF2924).
 
     0.848
Isop_2455
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119: IPR011109; KEGG: hoh:Hoch_2866 resolvase domain protein; PFAM: Resolvase domain; Recombinase; SPTR: Resolvase domain protein; PFAM: Recombinase; Resolvase, N terminal domain.
 
     0.842
Isop_2458
KEGG: sfu:Sfum_3781 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.789
Isop_2410
Resolvase domain protein; COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR007087: IPR006119: IPR011109; KEGG: mag:amb1201 site-specific recombinase; PFAM: Resolvase domain; Recombinase; SPTR: Site-specific recombinase; PFAM: Recombinase; Resolvase, N terminal domain.
  
     0.670
Isop_2440
KEGG: mag:amb0352 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.603
Isop_2456
KEGG: hoh:Hoch_2796 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.452
Isop_0135
Peptidase A24A prepilin type IV; InterPro IPR000045; KEGG: plm:Plim_0796 peptidase A24A prepilin type IV; PFAM: peptidase A24A prepilin type IV; SPTR: Peptidase A24A prepilin type IV; PFAM: Type IV leader peptidase family.
  
     0.451
Isop_2445
ParB domain protein nuclease; COGs: COG0863 DNA modification methylase; InterPro IPR003115: IPR002941: IPR002295: IPR015840; KEGG: cbe:Cbei_1632 DNA methylase N-4/N-6 domain-containing protein; PFAM: ParB domain protein nuclease; DNA methylase N-4/N-6 domain protein; SMART: ParB domain protein nuclease; SPTR: DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase; ParB-like nuclease domain.
  
     0.416
Isop_2443
Type III restriction protein res subunit; COGs: COG1061 DNA or RNA helicase of superfamily II; InterProIPR014021: IPR001650: IPR006935: IPR018886: IPR 014001; KEGG: mag:amb0356 superfamily II DNA/RNA helicase; PFAM: type III restriction protein res subunit; helicase domain protein; Uncharacterised protein family UPF0547; SMART: helicase domain protein; DEAD-like helicase; SPTR: Helicase domain protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; Uncharacterised protein family UPF0547.
  
     0.409
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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