STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2474InterPro IPR013249: IPR014284; KEGG: psl:Psta_3331 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (205 aa)    
Predicted Functional Partners:
Isop_2972
KEGG: rba:RB6539 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: TM2 domain.
  
     0.723
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.685
Isop_0788
Abortive infection protein; InterPro IPR003675; KEGG: rba:RB10877 hypothetical protein; PFAM: Abortive infection protein; SPTR: Putative uncharacterized protein; PFAM: CAAX amino terminal protease family.
  
     0.678
Isop_0860
KEGG: psl:Psta_1696 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.676
Isop_0937
KEGG: rba:RB4703 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.671
Isop_1535
KEGG: psl:Psta_4659 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.670
Isop_0258
Cna B domain protein; InterPro IPR008454; KEGG: rca:Rcas_2197 hypothetical protein; PFAM: Cna B domain protein; SPTR: Conserved repeat domain; PFAM: Cna protein B-type domain.
  
     0.669
Isop_1549
KEGG: psl:Psta_1016 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.654
Isop_1364
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: rba:RB12167 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Putative uncharacterized protein.
  
     0.650
Isop_2962
phospholipase/Carboxylesterase; COGs: COG0400 esterase; InterPro IPR003140; KEGG: psl:Psta_4332 phospholipase/carboxylesterase; PFAM: phospholipase/Carboxylesterase; SPTR: Putative uncharacterized protein; PFAM: Phospholipase/Carboxylesterase.
  
     0.649
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.