Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2498ADP-ribosylation/Crystallin J1; COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: gvi:glr0111 ADP-ribosylglycohydrolase; PFAM: ADP-ribosylation/Crystallin J1; SPTR: Glr0111 protein; PFAM: ADP-ribosylglycohydrolase. (310 aa)    
Predicted Functional Partners:
Isop_0703
COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187; KEGG: psl:Psta_4489 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II.
    
 
 0.549
Isop_1563
COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187; KEGG: reu:Reut_A0291 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II.
    
 
 0.549
Isop_2497
Hypothetical protein; InterPro IPR017909: IPR006311; KEGG: swi:Swit_2537 manganese and iron superoxide dismutase; SPTR: Manganese and iron superoxide dismutase.
       0.515
Isop_0928
COGs: COG0714 MoxR-like ATPase; InterPro IPR011704; KEGG: psl:Psta_0366 ATPase associated with various cellular activities AAA_5; PFAM: ATPase associated with various cellular activities AAA_5; SPTR: ATPase associated with various cellular activities AAA_5; PFAM: AAA domain (dynein-related subfamily).
  
     0.478
Isop_0926
InterPro IPR008912; KEGG: psl:Psta_0364 VWA containing CoxE family protein; PFAM: VWA containing CoxE family protein; SPTR: VWA containing CoxE family protein; PFAM: VWA domain containing CoxE-like protein.
 
     0.475
Isop_0927
Hypothetical protein; InterPro IPR002092; KEGG: psl:Psta_0365 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.457
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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