STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2572KEGG: chu:CHU_1515 protein-tyrosine-phosphatase; SPTR: Probable arsenate reductase. (229 aa)    
Predicted Functional Partners:
Isop_2571
Arsenical-resistance protein; COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR002657: IPR004706; KEGG: nde:NIDE3708 putative arsenite resistance protein ArsB; PFAM: Bile acid:sodium symporter; SPTR: Bile acid:sodium symporter; TIGRFAM: arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein.
  
  
 0.762
Isop_2573
InterPro IPR005243; KEGG: acp:A2cp1_1090 redox-active disulfide protein 2; SPTR: Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2; TIGRFAM: small redox-active disulfide protein 2.
     
 0.648
Isop_0702
Thioredoxin domain-containing protein; InterPro IPR013766: IPR017936; KEGG: rba:RB5782 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Probable thioredoxin; PFAM: Thioredoxin.
  
 
 0.590
Isop_2279
Hypothetical protein; KEGG: rba:RB12630 signal peptide; SPTR: Putative uncharacterized protein.
   
   0.565
Isop_3614
Hypothetical protein; KEGG: rba:RB12630 signal peptide; SPTR: Putative uncharacterized protein.
   
   0.565
Isop_0459
Thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR013766: IPR017937: IPR005746: IPR006662: IPR 017936; KEGG: tal:Thal_1357 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin; Belongs to the thioredoxin family.
  
 
 0.556
Isop_2248
COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR017937: IPR006662: IPR013766: IPR017936; KEGG: psl:Psta_1606 thioredoxin domain protein; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin domain protein; PFAM: Thioredoxin; TIGRFAM: thioredoxin.
  
 
 0.556
Isop_3719
Hypothetical protein; KEGG: rca:Rcas_0215 TPR repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
  
 
 0.556
Isop_3039
Capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702: IPR003856; KEGG: rmr:Rmar_1126 capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Capsular exopolysaccharide family; TIGRFAM: capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family.
  
 
 0.535
Isop_3129
Capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702: IPR003856; KEGG: rce:RC1_4006 succinoglycan biosynthesis transport protein ExoP; PFAM: lipopolysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; TIGRFAM: capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family.
  
 
 0.535
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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