STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Isop_2575KEGG: shw:Sputw3181_2951 cytochrome c biogenesis protein, transmembrane region; SPTR: Cytochrome c biogenesis protein, transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region. (256 aa)    
Predicted Functional Partners:
Isop_2576
KEGG: shn:Shewana3_2349 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.929
Isop_2574
Permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: tel:tll1886 hypothetical protein; PFAM: permease; SPTR: Tll1886 protein; PFAM: Predicted permease.
 
    0.817
Isop_2573
InterPro IPR005243; KEGG: acp:A2cp1_1090 redox-active disulfide protein 2; SPTR: Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2; TIGRFAM: small redox-active disulfide protein 2.
 
  
 0.701
Isop_3584
Cytochrome c assembly protein; COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541; KEGG: bba:Bd1606 cytochrome c-type biogenesis protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome C assembly protein; PFAM: Cytochrome C assembly protein.
  
  
 0.674
Isop_3323
Zinc/iron permease; InterPro IPR003689; KEGG: psl:Psta_1336 zinc/iron permease; PFAM: zinc/iron permease; SPTR: Metal cation transporter, ZIP family; PFAM: ZIP Zinc transporter.
   
    0.616
Isop_2578
Hypothetical protein; KEGG: tpt:Tpet_1749 redox-active disulfide protein 2; SPTR: Redox-active disulfide protein 2; PFAM: Arsenical resistance operon trans-acting repressor ArsD.
 
     0.595
Isop_2577
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: nfi:NFIA_003560 UbiE/COQ5 family methyltransferase, putative; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase UbiE/COQ5 family protein; PFAM: Methyltransferase domain.
       0.586
Isop_3585
Hypothetical protein; KEGG: amr:AM1_4402 cytochrome c biogenesis protein, CcsB-like protein, putative; SPTR: Cytochrome c biogenesis protein, CcsB-like protein, putative; PFAM: ResB-like family.
 
  
 0.546
Isop_2572
KEGG: chu:CHU_1515 protein-tyrosine-phosphatase; SPTR: Probable arsenate reductase.
     
 0.426
Isop_2579
Transcriptional regulator, ArsR family; InterPro IPR001845; KEGG: afw:Anae109_3644 regulatory protein ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Regulatory protein ArsR; PFAM: Bacterial regulatory protein, arsR family.
     
 0.423
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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