STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2579Transcriptional regulator, ArsR family; InterPro IPR001845; KEGG: afw:Anae109_3644 regulatory protein ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Regulatory protein ArsR; PFAM: Bacterial regulatory protein, arsR family. (128 aa)    
Predicted Functional Partners:
Isop_2578
Hypothetical protein; KEGG: tpt:Tpet_1749 redox-active disulfide protein 2; SPTR: Redox-active disulfide protein 2; PFAM: Arsenical resistance operon trans-acting repressor ArsD.
       0.661
Isop_2577
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: nfi:NFIA_003560 UbiE/COQ5 family methyltransferase, putative; PFAM: Methyltransferase type 11; SPTR: SAM-dependent methyltransferase UbiE/COQ5 family protein; PFAM: Methyltransferase domain.
 
     0.558
Isop_2574
Permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: tel:tll1886 hypothetical protein; PFAM: permease; SPTR: Tll1886 protein; PFAM: Predicted permease.
 
   
 0.432
Isop_2575
KEGG: shw:Sputw3181_2951 cytochrome c biogenesis protein, transmembrane region; SPTR: Cytochrome c biogenesis protein, transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region.
     
 0.423
Isop_2576
KEGG: shn:Shewana3_2349 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.420
Isop_2580
Peptidase S45 penicillin amidase; COGs: COG2366 Protein related to penicillin acylase; InterPro IPR002692: IPR014395; KEGG: ote:Oter_0831 penicillin amidase; PFAM: peptidase S45 penicillin amidase; SPTR: Penicillin amidase; PFAM: Penicillin amidase.
       0.401
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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