STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Isop_2666Hypothetical protein; KEGG: sli:Slin_5931 leucine-rich repeat, ribonuclease inhibitor subtype; SPTR: Putative regulatory subunit. (120 aa)    
Predicted Functional Partners:
Isop_2665
Oligopeptide transporter, OPT family; COGs: COG1297 membrane protein; InterPro IPR004813: IPR004814; KEGG: ote:Oter_4609 OPT family oligopeptide transporter; PFAM: Oligopeptide transporter OPT superfamily protein; SPTR: Oligopeptide transporter, OPT family; TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily; PFAM: OPT oligopeptide transporter protein; TIGRFAM: putative oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily.
       0.773
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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