STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2723KEGG: sti:Sthe_0323 hypothetical protein; SPTR: Putative uncharacterized protein. (904 aa)    
Predicted Functional Partners:
Isop_2141
KEGG: tro:trd_1801 hypothetical protein; SPTR: Putative membrane protein.
  
     0.774
Isop_0899
Protein of unknown function, membrane YfhO; InterPro IPR018580; KEGG: psl:Psta_4419 hypothetical protein; PFAM: Protein of unknown function, membrane YfhO; SPTR: Putative uncharacterized protein; PFAM: Bacterial membrane protein YfhO.
  
     0.769
Isop_2736
KEGG: mxa:MXAN_5625 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.767
Isop_2254
KEGG: aba:Acid345_4727 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.766
Isop_2737
Hypothetical protein; KEGG: rrs:RoseRS_0824 glycosyltransferase; SPTR: 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
    0.762
Isop_3553
KEGG: hau:Haur_0785 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.762
Isop_0175
Glycosyl transferase family 39; InterPro IPR003342; KEGG: psl:Psta_0545 hypothetical protein; PFAM: glycosyl transferase family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
    0.760
Isop_1399
KEGG: rmr:Rmar_0200 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.757
Isop_1772
KEGG: hoh:Hoch_4942 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.754
Isop_0835
Hypothetical protein; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: hau:Haur_0806 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
    0.750
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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