STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2755Conserved repeat domain protein; InterPro IPR010916: IPR006650: IPR001434; KEGG: psl:Psta_0523 conserved repeat domain protein; SPTR: 60 kDa outer membrane protein; TIGRFAM: conserved repeat domain protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain. (1139 aa)    
Predicted Functional Partners:
Isop_2756
KEGG: plm:Plim_2088 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Isop_0986
KEGG: psl:Psta_0111 organic solvent tolerance protein OstA-like protein; SPTR: Organic solvent tolerance protein OstA-like protein.
  
     0.770
Isop_1535
KEGG: psl:Psta_4659 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.763
Isop_3563
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR013026: IPR001440; KEGG: plm:Plim_0726 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein.
  
     0.763
Isop_0059
InterPro IPR010298; KEGG: psl:Psta_2939 protein of unknown function DUF901; PFAM: protein of unknown function DUF901; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF901).
  
     0.759
Isop_2377
KEGG: plm:Plim_0704 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.759
Isop_2518
Peptidase S24 and S26 domain protein; InterPro IPR006650: IPR019758: IPR000223; KEGG: plm:Plim_1125 peptidase S24 and S26 domain protein; SPTR: Peptidase S24 and S26 domain protein.
  
     0.759
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.758
Isop_3562
KEGG: plm:Plim_0727 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.757
Isop_1769
KEGG: rba:RB11569 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.756
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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