STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2770Hemolysin-type calcium-binding region; InterPro IPR018512: IPR018511: IPR001343; KEGG: cpb:Cphamn1_0514 RTX toxins and related Ca2+-binding protein; PFAM: Hemolysin-type calcium-binding region; SPTR: Hemolysin-type calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies). (314 aa)    
Predicted Functional Partners:
Isop_2769
Membrane-bound dehydrogenase domain protein; InterPro IPR009056: IPR003088: IPR013428: IPR013427; KEGG: dfe:Dfer_5354 membrane-bound dehydrogenase domain protein; PFAM: cytochrome c class I; SPTR: Putative uncharacterized protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type.
       0.412
Isop_2872
Protein serine phosphatase with GAF(s) sensor(s); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR000253: IPR003018: IPR001932: IPR019756: IPR 010822; KEGG: psl:Psta_4013 protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation protein E; Forkhead-associated protein; SMART: protein phosphatase 2C domain protein; Forkhead-associated protein; GAF domain protein; SPTR: Protein serine phosphatase with GAF(S) sensor(S); PFAM: GAF domain; Stage II sporulation protein E (SpoIIE); FHA domain.
  
    0.401
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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