STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2786UbiA prenyltransferase; InterPro IPR000537; KEGG: cyt:cce_4454 hypothetical protein; PFAM: UbiA prenyltransferase; SPTR: Putative uncharacterized protein; PFAM: UbiA prenyltransferase family. (314 aa)    
Predicted Functional Partners:
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
    
 0.917
Isop_1824
UbiD family decarboxylase; COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: gur:Gura_1842 UbiD family decarboxylase; PFAM: Carboxylyase-related protein; SPTR: UbiD family decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases; Belongs to the UbiD family.
    
 0.917
Isop_1508
COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR006371: IPR000537; KEGG: psl:Psta_1373 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: 4-hydroxybenzoate polyprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
     
  0.900
Isop_0271
Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: plm:Plim_0149 trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; SPTR: Trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 
 0.824
Isop_1140
KEGG: scb:SCAB_17871 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.792
Isop_2804
TatD-related deoxyribonuclease; COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001130: IPR012022; KEGG: psl:Psta_3790 TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; SPTR: TatD-related deoxyribonuclease; PFAM: TatD related DNase.
 
   
 0.792
Isop_2521
Type I phosphodiesterase/nucleotide pyrophosphatase; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: azl:AZL_b05760 hypothetical protein; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Putative uncharacterized protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
   
 0.784
Isop_1064
COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR016303: IPR002658; KEGG: rba:RB6147 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase.
 
   
 0.777
Isop_2785
COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143: IPR004408; KEGG: mxa:MXAN_4152 BirA bifunctional protein; PFAM: biotin/lipoate A/B protein ligase; SPTR: BirA bifunctional protein; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region.
       0.754
Isop_0918
KEGG: plm:Plim_1580 large, multifunctional secreted protein; SPTR: Large, multifunctional secreted protein.
  
     0.714
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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