STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2789ATP-dependent helicase HrpB; COGs: COG1643 HrpA-like helicase; InterProIPR014021: IPR001650: IPR014001: IPR007502: IPR 013689: IPR010225; KEGG: psl:Psta_3120 ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); ATP-dependent helicase C-terminal; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB. (904 aa)    
Predicted Functional Partners:
Isop_1517
DEAD/DEAH box helicase domain protein; COGs: COG0513 Superfamily II DNA and RNA helicase; InterProIPR014021: IPR001650: IPR014014: IPR000629: IPR 014001: IPR011545; KEGG: psl:Psta_1620 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
   
 0.899
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
  0.892
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.891
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
 0.883
Isop_1946
COGs: COG0349 Ribonuclease D; InterPro IPR002562: IPR002121: IPR006292; KEGG: plm:Plim_0672 ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; PRIAM: Ribonuclease D; SMART: 3'-5' exonuclease; HRDC domain protein; SPTR: Ribonuclease D; TIGRFAM: ribonuclease D; PFAM: HRDC domain; 3'-5' exonuclease; TIGRFAM: ribonuclease D.
  
  0.871
Isop_1293
COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130: IPR011506: IPR001343; KEGG: psl:Psta_1955 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; Planctomycete extracellular domain protein; Hemolysin-type calcium-binding region; SPTR: Peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
  
 0.832
Isop_1182
COGs: COG0539 Ribosomal protein S1; InterPro IPR003029: IPR000110; KEGG: plm:Plim_1620 ribosomal protein S1; PFAM: RNA binding S1 domain protein; SPTR: Ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1.
 
 0.810
Isop_1026
KEGG: plm:Plim_2686 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 0.795
Isop_1339
KEGG: plm:Plim_0620 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 0.795
Isop_1521
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.795
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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