STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2807LVIVD repeat-containing protein; COGs: COG5276 conserved hypothetical protein; InterPro IPR011031: IPR013211; KEGG: sus:Acid_4317 LVIVD repeat-containing protein; PFAM: LVIVD repeat-containing protein; SPTR: LVIVD repeat protein; PFAM: LVIVD repeat. (1387 aa)    
Predicted Functional Partners:
Isop_2806
KEGG: sus:Acid_4316 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.861
Isop_0601
KEGG: sus:Acid_4318 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.790
Isop_3161
KEGG: sus:Acid_4311 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.785
Isop_0623
Hypothetical protein; InterPro IPR011031; KEGG: sus:Acid_4315 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.783
Isop_3156
Hypothetical protein; InterPro IPR011031; KEGG: sus:Acid_4315 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.783
Isop_0622
Hypothetical protein; InterPro IPR011031; KEGG: sus:Acid_4315 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.774
Isop_3162
Hypothetical protein; InterPro IPR011031; KEGG: sus:Acid_4312 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.774
Isop_0604
phospholipase/Carboxylesterase; InterPro IPR003140; KEGG: sus:Acid_1148 putative esterase; PFAM: phospholipase/Carboxylesterase; SPTR: Putative esterase; PFAM: Phospholipase/Carboxylesterase.
  
     0.678
Isop_1833
CRISPR-associated protein, GSU0054; InterPro IPR019089; KEGG: hoh:Hoch_4849 hypothetical protein; PFAM: CRISPR-associated protein, GSU0054; SPTR: Putative uncharacterized protein; PFAM: CRISPR-associated protein, GSU0054 family (Cas_GSU0054); TIGRFAM: CRISPR-associated protein, GSU0054 family.
  
     0.678
Isop_3202
Hypothetical protein; KEGG: ttu:TERTU_3103 putative type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Putative type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
  
     0.624
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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