STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2825COGs: COG4970 Tfp pilus assembly protein FimT; InterPro IPR001120: IPR012902; KEGG: xac:XAC2669 pre-pilin like leader sequence; SPTR: Pre-pilin like leader sequence; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (542 aa)    
Predicted Functional Partners:
Isop_2826
Hypothetical protein; InterPro IPR012902; KEGG: plm:Plim_0403 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.874
Isop_2824
Hypothetical protein; InterPro IPR001120: IPR012902; KEGG: plm:Plim_0405 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
       0.773
Isop_2827
Hypothetical protein; InterPro IPR017871: IPR001120: IPR012902; KEGG: plm:Plim_0402 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
     
 0.620
Isop_2397
COGs: COG0658 membrane metal-binding protein; InterPro IPR004477: IPR000073; KEGG: rba:RB9840 competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; alpha/beta hydrolase fold; SPTR: Probable competence protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
     
 0.441
Isop_2823
Hypothetical protein; InterPro IPR000983: IPR001120: IPR012902; KEGG: plm:Plim_0406 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
       0.411
Isop_2822
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004: IPR018076; KEGG: plm:Plim_0407 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type IV fimbrial assembly protein PilC; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.403
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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