STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Isop_2889Protein of unknown function DUF480; COGs: COG3132 conserved hypothetical protein; InterPro IPR007432; KEGG: psl:Psta_3246 hypothetical protein; PFAM: protein of unknown function DUF480; SPTR: Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function, DUF480; Belongs to the UPF0502 family. (273 aa)    
Predicted Functional Partners:
Isop_2888
Glycosyl hydrolase 38 domain protein; InterPro IPR011682; KEGG: psl:Psta_3607 hypothetical protein; PFAM: glycosyl hydrolase 38 domain protein; SPTR: Putative uncharacterized protein.
       0.780
Isop_2887
Hypothetical protein; KEGG: mav:MAV_2634 cytochrome P450; SPTR: Putative uncharacterized protein.
       0.516
Isop_1196
COGs: COG3008 Paraquat-inducible protein B; InterPro IPR007498: IPR003399; KEGG: abo:ABO_2405 PqiB family protein; PFAM: Paraquat-inducible protein A; Mammalian cell entry related domain protein; SPTR: Mce related protein; PFAM: mce related protein; Paraquat-inducible protein A; TIGRFAM: integral membrane protein, PqiA family.
 
     0.442
Isop_2890
COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424: IPR011344; KEGG: amu:Amuc_1863 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
       0.433
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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