STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_2896InterPro IPR017936: IPR000866; KEGG: psl:Psta_2574 redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Redoxin domain protein; PFAM: AhpC/TSA family. (688 aa)    
Predicted Functional Partners:
Isop_0305
Hypothetical protein; InterPro IPR000297; KEGG: plm:Plim_2735 PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase.
  
   0.760
Isop_0735
Prenyltransferase/squalene oxidase; InterPro IPR001330: IPR004155; KEGG: psl:Psta_2719 hypothetical protein; PFAM: Prenyltransferase/squalene oxidase; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: Putative uncharacterized protein.
  
    0.758
Isop_0018
KEGG: plm:Plim_0750 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.756
Isop_3658
InterPro IPR001434; KEGG: psl:Psta_4233 conserved repeat domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved repeat domain protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
  
     0.754
Isop_0202
KEGG: plm:Plim_3249 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.750
Isop_0716
KEGG: rba:RB8980 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1559).
  
     0.750
Isop_2047
InterPro IPR011521; KEGG: psl:Psta_1964 YTV domain protein; PFAM: YTV repeat-containing protein; SPTR: YTV domain protein; PFAM: YTV.
 
     0.750
Isop_3179
Hypothetical protein; KEGG: rba:RB850 signal peptide; SPTR: Putative uncharacterized protein.
 
     0.750
Isop_0967
Hypothetical protein; KEGG: rba:RB6127 signal peptide; SPTR: Putative uncharacterized protein.
  
    0.747
Isop_2987
KEGG: psl:Psta_3111 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.747
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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