STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3063InterPro IPR011031; KEGG: rba:RB11084 response regulator aspartate phosphatase RapC; SPTR: Putative uncharacterized protein. (1064 aa)    
Predicted Functional Partners:
Isop_3064
ASPIC/UnbV domain protein; InterPro IPR013517: IPR011519; KEGG: rba:RB11088 hypothetical protein; PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; SPTR: Similar to ASPIC; PFAM: ASPIC and UnbV; FG-GAP repeat.
 
   0.924
Isop_0465
Hypothetical protein; KEGG: rba:RB13032 putative permease; SPTR: Putative uncharacterized protein; PFAM: Predicted permease.
  
     0.632
Isop_3024
KEGG: kfl:Kfla_2008 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: actinobacterial surface-anchored protein domain.
  
     0.586
Isop_2894
Cadherin; InterPro IPR000601: IPR002126; KEGG: sro:Sros_4284 hypothetical protein; PFAM: Cadherin; SPTR: Putative uncharacterized protein.
  
    0.578
Isop_3062
KEGG: cqu:CpipJ_CPIJ009407 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.561
Isop_2239
Exosortase EpsH-related protein; InterPro IPR019127; KEGG: rba:RB2461 hypothetical protein; PFAM: Exosortase EpsH-related; SPTR: Putative uncharacterized protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: eight transmembrane protein EpsH (proposed exosortase).
  
     0.533
Isop_0876
KEGG: rde:RD1_1585 VBCS repeat-containing protein; SPTR: VCBS repeat domain protein.
  
    0.512
Isop_1967
ASPIC/UnbV domain protein; InterPro IPR013517: IPR011519; KEGG: sus:Acid_0215 ASPIC/UnbV domain-containing protein; PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; SPTR: ASPIC/UnbV domain protein; PFAM: ASPIC and UnbV; FG-GAP repeat.
  
   0.507
Isop_1191
ASPIC/UnbV domain protein; InterPro IPR013517: IPR011519; KEGG: sus:Acid_1964 ASPIC/UnbV domain-containing protein; PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; SPTR: ASPIC/UnbV domain protein; PFAM: ASPIC and UnbV.
 
   0.451
Isop_3119
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sti:Sthe_0853 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: Methyltransferase domain.
  
     0.416
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.