STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3076Extracellular solute-binding protein family 5; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: psl:Psta_2713 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; SPTR: Putative uncharacterized protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle. (819 aa)    
Predicted Functional Partners:
Isop_3075
Forkhead-associated protein; InterPro IPR000253; KEGG: psl:Psta_2714 pyrrolo-quinoline quinone; PFAM: Forkhead-associated protein; SPTR: Putative uncharacterized protein.
 
     0.890
Isop_3693
Hypothetical protein; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR017985; KEGG: rcp:RCAP_rcc02544 ABC transporter substrate-binding protein; SPTR: ABC transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding protein.
  
   
 0.777
Isop_2254
KEGG: aba:Acid345_4727 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.770
Isop_1520
InterPro IPR019734: IPR013026: IPR001440; KEGG: dak:DaAHT2_1784 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein.
 
    0.769
Isop_2275
InterPro IPR001623; KEGG: tcu:Tcur_1396 fibronectin type III domain protein; PFAM: heat shock protein DnaJ domain protein; SPTR: Fibronectin type III domain protein.
  
     0.769
Isop_2653
Hypothetical protein; COGs: COG3387 Glucoamylase and related glycosyl hydrolase; KEGG: tjr:TherJR_2725 glycoside hydrolase 15-related protein; SPTR: Glycoside hydrolase 15-related protein.
  
     0.768
Isop_3488
KEGG: psl:Psta_1964 YTV domain protein; SPTR: YTV domain protein.
 
     0.767
Isop_2388
KEGG: psl:Psta_2133 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.766
Isop_3545
Pyrrolo-quinoline quinone repeat-containing protein; InterPro IPR002372: IPR019734: IPR018391; KEGG: psl:Psta_2917 hypothetical protein; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; SPTR: Putative uncharacterized protein.
  
     0.765
Isop_3546
Hypothetical protein; InterPro IPR002052; KEGG: afv:AFLA_092170 hypothetical protein; SPTR: Minus agglutinin.
  
     0.765
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.