STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3085KEGG: tfu:Tfu_2074 tyrosine protein kinase:serine/threonine protein kinase; SPTR: Tyrosine protein kinase:Serine/threonine protein kinase. (148 aa)    
Predicted Functional Partners:
Isop_3084
Protein of unknown function DUF1501; InterPro IPR006311: IPR017909: IPR010869; KEGG: rba:RB12566 sulfatase; PFAM: protein of unknown function DUF1501; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
       0.773
Isop_3086
Hypothetical protein; KEGG: gox:GOX1607 lipopolysaccharide N-acetylglucosaminyltransferase II; SPTR: Lipopolysaccharide N-acetylglucosaminyltransferase II.
       0.639
Isop_3083
Protein of unknown function DUF1549; InterPro IPR009056: IPR011444; KEGG: rba:RB12567 hypothetical protein; PFAM: protein of unknown function DUF1549; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1549); Planctomycete cytochrome C; Protein of unknown function (DUF1553).
       0.543
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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