STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3128KEGG: plm:Plim_3885 O-antigen polymerase; SPTR: O-antigen polymerase; PFAM: O-Antigen ligase. (436 aa)    
Predicted Functional Partners:
Isop_3127
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR000412: IPR013525; KEGG: chl:Chy400_2271 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter.
  
  
 0.795
Isop_3193
KEGG: plm:Plim_3876 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.780
Isop_0851
Anti-anti-sigma factor; InterPro IPR002645: IPR003658; KEGG: plm:Plim_0153 anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Putative uncharacterized protein; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
  
     0.727
Isop_2506
KEGG: plm:Plim_3939 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.684
Isop_1412
Hypothetical protein; KEGG: plm:Plim_3397 4-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase of PMT family; SPTR: Putative uncharacterized protein.
  
     0.672
Isop_3129
Capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702: IPR003856; KEGG: rce:RC1_4006 succinoglycan biosynthesis transport protein ExoP; PFAM: lipopolysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; TIGRFAM: capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family.
  
  
 0.667
Isop_0385
Hypothetical protein; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: plm:Plim_3516 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.663
Isop_0204
KEGG: mac:MA3428 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.640
Isop_0134
Flp/Fap pilin component; InterPro IPR007047; KEGG: psl:Psta_2071 Flp/Fap pilin component; PFAM: Flp/Fap pilin component; SPTR: Flp/Fap pilin component; PFAM: Flp/Fap pilin component.
  
     0.636
Isop_3070
InterPro IPR011465; KEGG: plm:Plim_3142 protein of unknown function DUF1571; PFAM: protein of unknown function DUF1571; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1571).
  
     0.630
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.