STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3144InterPro IPR003400; KEGG: plm:Plim_1698 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR. (321 aa)    
Predicted Functional Partners:
Isop_3145
COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: plm:Plim_1697 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
     0.917
Isop_2860
KEGG: plm:Plim_0513 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.859
Isop_3146
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: psl:Psta_2717 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Probable TolQ; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.839
Isop_3537
InterPro IPR013222; KEGG: psl:Psta_2909 glycosyl hydrolase family 98 putative carbohydrate binding module; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; SPTR: Putative uncharacterized protein; PFAM: NPCBM/NEW2 domain.
 
   0.819
Isop_3075
Forkhead-associated protein; InterPro IPR000253; KEGG: psl:Psta_2714 pyrrolo-quinoline quinone; PFAM: Forkhead-associated protein; SPTR: Putative uncharacterized protein.
 
     0.797
Isop_1771
Hypothetical protein; KEGG: psl:Psta_2465 MotA/TolQ/ExbB proton channel; SPTR: Probable biopolymer transport ExbB-related protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.778
Isop_3546
Hypothetical protein; InterPro IPR002052; KEGG: afv:AFLA_092170 hypothetical protein; SPTR: Minus agglutinin.
  
     0.769
Isop_0735
Prenyltransferase/squalene oxidase; InterPro IPR001330: IPR004155; KEGG: psl:Psta_2719 hypothetical protein; PFAM: Prenyltransferase/squalene oxidase; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: Putative uncharacterized protein.
 
     0.764
Isop_2968
KEGG: plm:Plim_3396 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.764
Isop_0018
KEGG: plm:Plim_0750 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.763
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.