STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3170KEGG: plm:Plim_2314 hypothetical protein; SPTR: Putative uncharacterized protein. (1645 aa)    
Predicted Functional Partners:
Isop_0414
InterPro IPR011933; KEGG: psl:Psta_0478 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain.
 
     0.757
Isop_3542
Conserved hypothetical protein; InterPro IPR011933: IPR002035; KEGG: psl:Psta_2914 hypothetical protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A domain; Aerotolerance regulator N-terminal; CARDB; TIGRFAM: N-terminal double-transmembrane domain.
 
     0.750
Isop_0415
Protein of unknown function DUF1355; InterPro IPR010768: IPR002035; KEGG: plm:Plim_2313 hypothetical protein; PFAM: protein of unknown function DUF1355; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1355).
 
     0.742
Isop_3541
InterPro IPR002035: IPR010768; KEGG: psl:Psta_2913 protein of unknown function DUF1355; PFAM: protein of unknown function DUF1355; von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Putative uncharacterized protein; PFAM: von Willebrand factor type A domain; Protein of unknown function (DUF1355).
  
     0.680
Isop_0409
Prenyltransferase/squalene oxidase; InterPro IPR001330; KEGG: plm:Plim_0306 A-macroglobulin complement component; PFAM: Prenyltransferase/squalene oxidase; SPTR: A-macroglobulin complement component.
  
     0.648
Isop_1648
KEGG: psl:Psta_2467 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.634
Isop_3092
Hypothetical protein; KEGG: psl:Psta_4662 O-antigen polymerase; SPTR: Hemocyanin type 1-like protein; PFAM: O-Antigen ligase.
  
     0.625
Isop_3525
Peptidase domain protein; InterPro IPR007280; KEGG: psl:Psta_2091 peptidase domain protein; PFAM: peptidase domain protein; SPTR: Peptidase domain protein; PFAM: Bacterial Ig-like domain (DUF1927).
  
     0.619
Isop_0848
InterPro IPR003825; KEGG: plm:Plim_1277 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; PFAM: Colicin V production protein.
 
     0.617
Isop_3462
InterPro IPR019734: IPR013026: IPR001440; KEGG: plm:Plim_0239 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; PFAM: Tetratricopeptide repeat.
 
     0.607
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.