STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3175KEGG: mrb:Mrub_1590 hypothetical protein; SPTR: Putative uncharacterized protein. (207 aa)    
Predicted Functional Partners:
Isop_3241
COGs: COG1538 Outer membrane protein; KEGG: plm:Plim_2028 outer membrane protein-like protein; SPTR: Outer membrane protein-like protein; PFAM: Outer membrane efflux protein.
  
     0.606
Isop_3240
InterPro IPR000089; KEGG: mfa:Mfla_2222 secretion protein HlyD; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Secretion protein HlyD.
  
     0.565
Isop_2143
Hypothetical protein; KEGG: psl:Psta_4324 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; SPTR: Hypothetical membrane protein.
 
     0.543
Isop_3239
ABC transporter related protein; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR017871: IPR003593: IPR003439: IPR017940; KEGG: psl:Psta_2756 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Probable toxin secretion ABC transporter ATP-binding protein; PFAM: ABC transporter.
  
     0.521
Isop_3164
KEGG: hla:Hlac_0734 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.502
Isop_3174
KEGG: mdo:100032383 hypothetical protein LOC100032383; SPTR: Whole genome shotgun sequence assembly, scaffold_59.
       0.488
Isop_3176
Endonuclease/exonuclease/phosphatase; InterPro IPR005135; KEGG: cpc:Cpar_1256 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family.
       0.473
Isop_3253
InterPro IPR011576; KEGG: srm:SRM_01614 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase.
  
     0.471
Isop_2515
Hypothetical protein; KEGG: hsa:4583 mucin 2, oligomeric mucus/gel-forming; SPTR: Mucin-2.
  
     0.412
Isop_0465
Hypothetical protein; KEGG: rba:RB13032 putative permease; SPTR: Putative uncharacterized protein; PFAM: Predicted permease.
  
     0.411
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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