STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Isop_3196InterPro IPR002035; KEGG: rrs:RoseRS_2799 von Willebrand factor, type A; SPTR: von Willebrand factor, type A. (644 aa)    
Predicted Functional Partners:
Isop_1347
Hypothetical protein; COGs: COG1178 ABC-type Fe3+ transport system permease component; KEGG: ttj:TTHA0716 molybdenum ABC transporter, permease protein; SPTR: Binding-protein-dependent transport systems inner membrane component.
  
  
 0.650
Isop_3448
Hypothetical protein; COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: psl:Psta_3967 binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  
 0.650
Isop_3199
KEGG: fal:FRAAL1778 hypothetical protein; SPTR: Glycosyl transferase family 39.
 
     0.594
Isop_3197
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sus:Acid_0271 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1.
 
     0.546
Isop_2917
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR019782: IPR017986: IPR020472: IPR001632: IPR 001680: IPR019775: IPR019781; KEGG: cag:Cagg_1814 NB-ARC domain protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein; SPTR: NB-ARC domain protein; PFAM: WD domain, G-beta repeat.
  
     0.514
Isop_3194
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: afw:Anae109_2016 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase family 2.
     
 0.483
Isop_3195
Putative serineacetyltransferase; COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: scl:sce5074 putative serineacetyltransferase; SPTR: Putative serineacetyltransferase.
       0.470
Isop_2008
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: rms:RMA_0089 sugar phosphate permease; PFAM: major facilitator superfamily MFS_1; SPTR: Glycerol-3-phosphate transporter; PFAM: Major Facilitator Superfamily.
  
    0.450
Isop_2226
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: rxy:Rxyl_2476 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
  
    0.450
Isop_3049
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: gem:GM21_2012 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
  
    0.450
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.