STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3205Hypothetical protein; KEGG: psl:Psta_2457 tetratricopeptide TPR_2 repeat protein; SPTR: Putative uncharacterized protein. (504 aa)    
Predicted Functional Partners:
Isop_3203
COGs: COG0429 hydrolase of the alpha/beta-hydrolase fold; InterPro IPR000952: IPR012020; KEGG: psl:Psta_4160 alpha/beta hydrolase fold protein; SPTR: Putative uncharacterized protein.
       0.516
Isop_3204
Hypothetical protein; KEGG: psl:Psta_2457 tetratricopeptide TPR_2 repeat protein; SPTR: Putative uncharacterized protein.
      
0.516
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.