Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Isop_3223KEGG: rca:Rcas_0326 hypothetical protein; SPTR: Putative uncharacterized protein. (310 aa)    
Predicted Functional Partners:
Isop_3224
Gp37Gp68 family protein; COGs: COG4422 Bacteriophage protein gp37; InterPro IPR011101; KEGG: hoh:Hoch_6140 Gp37Gp68 family protein; PFAM: Gp37Gp68 family protein; SPTR: Phage Gp37Gp68; PFAM: Phage protein Gp37/Gp68.
 
  
 0.947
Isop_3222
Hypothetical protein; KEGG: btk:BT9727_0872 oxidoreductase.
       0.565
Isop_3225
COGs: COG2345 transcriptional regulator protein; InterPro IPR000485: IPR001845; KEGG: plm:Plim_2387 transcriptional regulator protein-like protein; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Putative uncharacterized protein; PFAM: Bacterial regulatory protein, arsR family.
       0.448
Isop_3372
KEGG: mar:MAE_40430 hypothetical protein; SPTR: Genome sequencing data, contig C279; PFAM: Protein of unknown function DUF82.
  
     0.444
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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