STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_3291Arginine decarboxylase; COGs: COG1945 conserved hypothetical protein; InterPro IPR002724; KEGG: aca:ACP_1744 pyruvoyl-dependent arginine decarboxylase; PFAM: Pyruvoyl-dependent arginine decarboxylase; PRIAM: Arginine decarboxylase; SPTR: Arginine decarboxylase, pyruvoyl-dependent; TIGRFAM: arginine decarboxylase, pyruvoyl-dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); TIGRFAM: arginine decarboxylase, pyruvoyl-dependent. (181 aa)    
Predicted Functional Partners:
Isop_0573
Agmatine deiminase; COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: aca:ACP_1746 peptidyl-arginine deiminase family protein; PFAM: Porphyromonas-type peptidyl-arginine deiminase; PRIAM: Agmatine deiminase; SPTR: Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
    
  0.903
Isop_3073
Amidinotransferase; COGs: COG1834 N-Dimethylarginine dimethylaminohydrolase; InterPro IPR003198; KEGG: psl:Psta_3749 amidinotransferase; PFAM: amidinotransferase; SPTR: Amidinotransferase; PFAM: Amidinotransferase.
     
  0.900
argH
COGs: COG0165 Argininosuccinate lyase; InterPro IPR009049: IPR000362: IPR003031: IPR020557; KEGG: psl:Psta_0383 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; manually curated; PFAM: Lyase; TIGRFAM: argininosuccinate lyase.
     
  0.800
Isop_1096
Homospermidine synthase (spermidine-specific); COGs: COG1899 Deoxyhypusine synthase; InterPro IPR002773; KEGG: aca:ACP_1729 deoxyhypusine synthase-like protein; PFAM: deoxyhypusine synthase; SPTR: Deoxyhypusine synthase family protein; PFAM: Deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase; Belongs to the deoxyhypusine synthase family.
 
   
 0.660
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.